TrEMBL is a computer-annotated supplement of SWISS-PROT that contains all the translations of EMBL nucleotide sequence entries, which are not yet integrated in SWISS-PROT. Currently, SWISS-PROT and TrEMBL have 0.5 and 7.6 million sequences, respectively.
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How to obtain Swiss-Prot and TrEMBL?
Tel: +44 1223 494 444; Fax: +44 1223 494 468; Email: datalib@ebi.ac.uk From a computer linked to the Internet you can obtain SWISS-PROT and TrEMBL using anonymous FTP (File Transfer Protocol) from the following servers: ftp.expasy.ch and ftp.ebi.ac.uk How to submit data or updates/corrections to SWISS-PROT
When did Swiss-Prot and TrEMBL come out?
All statistical information given in this article is retrieved from SWISS-PROT release 40.27 (August 2002) and TrEMBL release 21.10 (September 2002), respectively. REFERENCES 1. O'Donovan C., Martin,M.J., Gattiker,A., Gasteiger,E., Bairoch,A. and Apweiler,R. (2002) High-quality protein knowledge resource: SWISS-PROT and TrEMBL.
What is the difference between SP-TrEMBL and Swiss-Prot?
SWISS-PROT accession numbers have been assigned to these entries. SP-TrEMBL is partially redundant against SWISS-PROT, since ~60 000 of these entries are only additional sequence reports of proteins already in SWISS-PROT.
What is UniProtKB/TrEMBL?
UniProtKB/TrEMBL is a computer-annotated protein sequence database complementing the UniProtKB/Swiss-Prot Protein Knowledgebase. The database is enriched with automated classification and annotation. The UniProtKB/TrEMBL group is headed by: Rolf Apweiler .
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What is the difference between SWISS-PROT and TrEMBL?
TrEMBL consists of entries in a SWISS-PROT format that are derived from the translation of all coding sequences in the EMBL nucleotide sequence database, that are not in SWISS-PROT. Unlike SWISS-PROT entries those in TrEMBL are awaiting manual annotation.
What is SWISS-PROT database?
SWISS-PROT (1) is an annotated protein sequence database, which was created at the Department of Medical Biochemistry of the University of Geneva and has been a collaborative effort of the Department and the European Molecular Biology Laboratory (EMBL), since 1987.
What is TrEMBL?
Introduction TrEMBL is a computer-annotated protein sequence database supplementing the SWISS-PROT Protein Sequence Data Bank. TrEMBL contains the translations of all coding sequences (CDS) present in the EMBL Nucleotide Sequence Database not yet integrated in SWISS-PROT.
Is SWISS-PROT and UniProt same?
Swiss-Prot (created in 1986) is a high quality manually annotated and non-redundant protein sequence database, which brings together experimental results, computed features and scientific conclusions. UniProtKB/Swiss-Prot is now the reviewed section of the UniProt Knowledgebase.
Who maintains SWISS-PROT?
1. Swiss-Prot and TrEMBL. SWISS-PROT is a protein sequence database containing detailed annotations. It was established in 1986 and jointly maintained by the department of medical biochemistry of the University of Geneva and the EMBL data library (now EBI) since 1987.
When was SWISS-PROT established?
SWISS-PROT ( 1 ) is an annotated protein sequence database established in 1986 and maintained collaboratively, since 1987, by the Department of Medical Biochemistry of the University of Geneva and the EMBL Data Library (now the EMBL Outstation-The European Bioinformatics Institute; 2 ).
What is SWISS-PROT Wikipedia?
UniProtKB/Swiss-Prot is a manually annotated, non-redundant protein sequence database. It combines information extracted from scientific literature and biocurator-evaluated computational analysis.
Is SWISS-PROT a primary database?
SWISS PROT is a protein sequence database. Annotations in the database provide all the information regarding the structure and function of a particular protein along with its functions and modifications if any. The data is all primary and easily accessible.
Is TrEMBL a primary database?
TrEMBL database (primary databases)
What is UniProt used for?
UniProt is the central resource for storing and interconnecting information from large and disparate sources, and the most comprehensive catalog of protein sequence and functional annotation.
Is TrEMBL a reviewed database?
UniProtKB/TrEMBL (unreviewed) contains protein sequences associated with computationally generated annotation and large-scale functional characterization.
How many proteins are in UniProt?
UniProt release 2020_04 contains over 189 million sequence records (Figure 1), with >292 000 proteomes, the complete set of proteins believed to be expressed by an organism, originating from completely sequenced viral, bacterial, archaeal and eukaryotic genomes available through the UniProtKB Proteomes portal (https:// ...