What is Swiss-Prot?
SWISS-PROT (Bairoch and Apweiler, 1996) is an annotated protein sequence database established in 1986 and maintained collaboratively, since 1987, by the Department of Medical Biochemistry of the University of Geneva and the EMBL Data Library. It is a curated protein sequence database, which strives to provide a high level of annotation (such as the description …
What is UniProtKB/SWISS-PROT?
01/01/2001 · Abstract. SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases.
What is in the Swiss-Prot protein sequence data bank?
UniProtKB/Swiss-Prot is the expertly curated component of UniProtKB (produced by the UniProt consortium). It contains hundreds of thousands of protein descriptions, including function, domain structure, subcellular location, post-translational modifications and functionally characterized variants. 💡 UniProt is one of the most widely used protein ...
What are the REM-TrEMBL entries in Swiss-Prot?
SWISS-PROT (Bairoch and Apweiler, 1999) is an annotated protein sequence database established in 1986 and maintained collaboratively by the Swiss Institute of Bioinformatics and the EMBL Outstation - The European Bioinformatics Institute (EBI).
What is SWISS-PROT ID?
The Swiss-Prot ID is a unique identifier assigned to a protein sequence in Swiss-Prot, a curated protein sequence database that provides a high level of annotation (such as the description of protein function, domain structures, post-translational modifications, variants, and so on), a minimal level of redundancy, and ...
Is SWISS-PROT a secondary database?
Hint: A primary database is one that makes information available to the public. The secondary databases take this information on sequences to then add layers to the existing DNA sequence and protein sequence data. Complete answer: SWISS PROT is a protein sequence database.
Who maintains SWISS-PROT?
UniProt consortiumThe UniProt consortium SIB, located in Geneva, Switzerland, maintains the ExPASy (Expert Protein Analysis System) servers that are a central resource for proteomics tools and databases.
What is the difference between SWISS-PROT and TrEMBL?
TrEMBL consists of entries in a SWISS-PROT format that are derived from the translation of all coding sequences in the EMBL nucleotide sequence database, that are not in SWISS-PROT. Unlike SWISS-PROT entries those in TrEMBL are awaiting manual annotation.
Is a computer annotated supplement is SWISS-PROT?
TrEMBL is a computer-annotated supplement of SWISS-PROT that contains all the translations of EMBL nucleotide sequence entries, which are not yet integrated in SWISS-PROT. Currently, SWISS-PROT and TrEMBL have 0.5 and 7.6 million sequences, respectively.
Is a computer annotated supplement database to SWISS-PROT?
TrEMBL, a Computer Annotated Supplement to Swiss-Prot.
What is Swiss-Prot used for?
SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domain structure, post-translational modifications, variants, etc), a minimal level of redundancy and a high level of integration with other databases.
How do I access Swiss-Prot?
There are multiple sites on the Web that can access the Swiss-Prot/TrEMBL and retrieve the database. Its main sites are the ExPASy Molecular Biology website (http://www.expasy.org/) and the European Institute of Bioinformatics (EBI) website (http://www.ebi.ac.uk/swissprot/).
How many protein entries are there in Swiss-Prot?
Content of the current SWISS-PROT release Currently (October 1999), SWISS-PROT contains ~81 000 sequence entries, comprising 30 million amino acids abstracted from ~65 000 references.
Is Swiss-Prot and UniProt same?
Swiss-Prot (created in 1986) is a high quality manually annotated and non-redundant protein sequence database, which brings together experimental results, computed features and scientific conclusions. UniProtKB/Swiss-Prot is now the reviewed section of the UniProt Knowledgebase.10-Apr-2018
What is TrEMBL in bioinformatics?
Introduction TrEMBL is a computer-annotated protein sequence database supplementing the SWISS-PROT Protein Sequence Data Bank. TrEMBL contains the translations of all coding sequences (CDS) present in the EMBL Nucleotide Sequence Database not yet integrated in SWISS-PROT.01-Jan-1999
What is PIR in bioinformatics?
Abstract. The Protein Information Resource (PIR) is an integrated public resource of protein informatics that supports genomic and proteomic research and scientific discovery.