Receiving Helpdesk

swiss pdb viewer

by Carmelo Kozey Published 3 years ago Updated 2 years ago

Is there a free version of Swiss Pdb Viewer?

The actual developer of the free program is Deepview. Swiss PDB Viewer works fine with 32-bit versions of Windows 7. The most popular versions among Swiss PDB Viewer users are 4.1 and 4.0. Swiss PDB Viewer relates to Education Tools.

Is it possible to use Swiss-PdbViewer directly for Advanced modelling?

However the SWISS-MODEL web interface evolved to a point where it is now possible to use it directly for advanced modelling. Maintaining a direct interface with Swiss-PdbViewer is too complex and no longer supported.

What is the warranty for Swiss-PdbViewer?

Swiss-PdbViewer is provided without warranty of any kind whether express, statutory or implied, including all implied warranties of merchantability and fitness for a particular purpose. Swiss-PdbViewer is provided on an "as is" basis.

What is the best free Pdb Viewer for Windows?

You may want to check out more software, such as Zeus PDB Viewer, Swiss Perfect 98 or Free Microsoft Project Viewer, which might be similar to Swiss PDB Viewer.

What is Swiss PDB viewer?

Swiss-PdbViewer (aka DeepView) is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts.

What is wrong about Swiss PDB viewer?

Which of the following is wrong about Swiss-PDB Viewer? Explanation: It is essentially a Swiss-Army knife for structure visualization and modeling because it incorporates so many functions in a small shareware program.

How do I cite the Swiss PDB viewer?

SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling. Electrophoresis 18, 2714-2723. If you can also include somewhere the official url, it would be nice.

How do I use DeepView?

Deep View is started by double-clicking the icon after installation. You should see a splash screen appear. Clicking on this will make it go away, and will leave you with the main program toolbar. To open a PDB file into Deep View simply select File → Open from the File menu, and select the file.

Which of the following is not a benefit of blast?

Which of the following is not a benefit of BLAST? Explanation: In addition to this, user friendly UI of BLAST is also one of its benefits. However, it does not handle gaps well.

Which of the following is a protein structure visualization tool?

Web3DMol provides a solution to visualize protein structures in web browsers.

Is SWISS-MODEL free?

SWISS-MODEL is accessible via a web interface at http://swissmodel.expasy.org, or directly as a link from SWISS-PROT (2) entries on the ExPASy server (34). The program DeepView (Swiss-PdbViewer) can be downloaded for free at http://www.expasy.org/spdbv/.

Why is SWISS-MODEL used?

SWISS-MODEL is a structural bioinformatics web-server dedicated to homology modeling of 3D protein structures. Homology modeling is currently the most accurate method to generate reliable three-dimensional protein structure models and is routinely used in many practical applications.

What is PDB used for?

PDB is a very important database when it comes to the areas of structural biology. Structures in PDB have wide applications. They can be used for various studies including identification of new protein structures via in silico approaches or can be used for protein–nucleic acid interaction studies.

What is QSQE in Swiss-model?

The QSQE score is a number between 0 and 1, reflecting the expected accuracy of the interchain contacts for a model built based a given alignment and template. In general a higher QSQE is "better", while a value above 0.7 can be considered reliable to follow the predicted quaternary structure in the modelling process.

How can I download model from Swiss-model?

InstructionsExtract that directory, which will then create a SWISS-MODEL_Repository folder)Create a new SWISSMODEL object, pointing it to that folder.Download models for a specified UniProt accession.

What is Z score in Swiss-model?

In SWISS-MODEL the QMEAN z-score represents an estimate of how comparable the model is to experimentally derived structures of similar size. QMEAN z-scores around zero indicate good agreement between the model structure and experimental structures of similar size.

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