What is ProCheck software?
http://www.ebi.ac.uk/thornton-srv/software/PROCHECK/. Check the stereochemical quality of a protein structure, producing a number of PostScript plots analysing its overall and residue-by-residue geometry. It includes PROCHECK-NMR for checking the quality of structures solved by NMR.
What is Procheck-NMR?
PROCHECK is a suite of programs to check the stereochemical quality of protein structures. You obtain PostScript plots of the following type: ramachand - 1. Ramachandran plot ramglypro - 2. Gly & Pro Ramachandran plots allramach - (where all 20 Ramachandran plots are produced) chi1_chi2 - 3. Chi1-Chi2 plots mainchpar - 4. Main-chain parameters
What is Aqua and Procheck-NMR?
PROCHECK. PROCHECK source information; Result analysis; from Protein Structures; Original references; WHATCHECK. WHATCHECK documentation and source For questions about WHATCHECK results, please email the creator: [email protected]; saves @2020 - DOE-MBI Services • Usage Contact: holton at mbi.ucla.edu for any questions ...
How do I install Procheck?
First, followed by instruction of Procheck official site, download all required file. (you need to fax the license agreement first). I use tar command to uncompress the procheck.19-Mar-2012
What does PROCHECK do?
PROCHECK checks the stereochemical quality of a protein structure, producing a number of PostScript plots analysing its overall and residue-by-residue geometry. It includes PROCHECK-NMR for checking the quality of structures solved by NMR.14-Jan-2010
How do you run Procheck?
To run PROCHECK:Enter the 4-letter PDB code of the protein of interest, its chain ID (if required) and its resolution.Click on RUN to run the program.Click on Reset to enter new code.
What is Whatcheck?
WHAT_CHECK (biotools:what_check) ID Verified http://swift.cmbi.ru.nl/gv/whatcheck/ 1. Structural biology › Protein structure analysis › Workbench. A suite of programs to assess the "stereochemical quality" of a given protein structure.
How do you read 3D results?
On verify3D, a score of more than 80% means that your model has good quality - however you must check with other evaluation tolls such as voromqa, Proq3 etc to make sure you have a high quality model.
How do you cite Pdbsum?
PDBsum is a database that provides an overview of the contents of each 3D macromolecular structure deposited in the Protein Data Bank....PDBsum.ContentAuthorsRoman Laskowski & al. (1997)Primary citationPMID 9433130AccessWebsitewww.ebi.ac.uk/pdbsum/8 more rows
How do you cite MolProbity?
Cite MolProbity: Chen et al. (2010) MolProbity: all-atom structure validation for macromolecular crystallography.
Intelligent, robust and reliable
FAG ProCheck is intelligent, easy to set up, robust and reliable. In addition, the system's modular construction means it can readily cater for various maintenance and condition monitoring strategies employed across different industry sectors.
How it works
The data recorded by sensors on rotating plant is subjected to initial assessment by FAG ProCheck and if defined alarm limits are exceeded, alert warnings are automatically generated and sent to defined interfaces - where they undergo further assessment.
Communication with higher level plant systems
For communication with higher level plant operating data systems, various inputs and outputs are available. Extra signals can be received via digital or analogue inputs and used for triggering or validation of messages. They can therefore be used as command variables for dependent signal analysis such as alarm threshold control.
Development with National Instruments
The FAG ProCheck hardware was developed in collaboration with National Instruments, a leading supplier of instrumentation and measurement software and hardware. Successful vibration monitoring of plant depends heavily on software.
Intelligent, Robust and Reliable
- FAG ProCheck is intelligent, easy to set up, robust and reliable. In addition, the system's modular construction means it can readily cater for various maintenance and condition monitoring strategies employed across different industry sectors. For example, the system is ATEX-certified and can therefore be used in hazardous or potentially explosive environments, and it has a rang…
How It Works
- The data recorded by sensors on rotating plant is subjected to initial assessment by FAG ProCheck and if defined alarm limits are exceeded, alert warnings are automatically generated and sent to defined interfaces - where they undergo further assessment. The system can be configured and adapted either by the end user customer or by Schaeffler's maintenance and ass…
Communication with Higher Level Plant Systems
- For communication with higher level plant operating data systems, various inputs and outputs are available. Extra signals can be received via digital or analogue inputs and used for triggering or validation of messages. They can therefore be used as command variables for dependent signal analysis such as alarm threshold control. These signals can also be used to initiate time-controll…
Development with National Instruments
- The FAG ProCheck hardware was developed in collaboration with National Instruments, a leading supplier of instrumentation and measurement software and hardware. Successful vibration monitoring of plant depends heavily on software. As well as software for configuration and presentation of data, FAG ProCheck also offers customers a range of analysis software tools, in…